2023 Genomic Selection Workshop

Software requirements for hands-on portion (Word file)

Workshop files (download option available at the link)

1.1 Genotyping pipeline and data cleaning by Jared Smith (NCSU/USDA)

1.2 T3 as a collaboration tool by Jean-Luc Jannink (Cornell University/USDA)

1.3 Background on imputation. Hands-on: Imputation with Beagle by Noah DeWitt (SunGrains/LSU)

1.4 Hands-on: Phenotype cleaning and preparation in R by Jeanette Lyerly (SunGrains/NCSU)

1.5 Background on field trial analysis. Hands-on: Calculating BLUEs from cleaned phenotypes for use in prediction by Noah DeWitt (Sungrains/LSU)

1.6 Part 1: Mixed models and genomic prediction background. Hands-on: Mixed models and prediction in rrBLUP by James Holland (NCSU/USDA)

1.7 Part 2: Hands-on: Mixed models and prediction in rrBLUP by James Holland (NCSU/USDA)

2.1 Four ways to bungle genomic selection by James Holland (NCSU/USDA)

2.2 Breeding program design for early generation genomic selection by Eric Olson (MSU)

2.3 Cooperative genomic selection through SunGrains by Jeanette Lyerly and Noah DeWitt (SunGrains)

2.4 Using genomic prediction to optimize line advancement decisions by Emily Conley (U Minnesota)

2.5 Genomic selection Integrating HTP into multi-trait models by Matias Dominguez (Utah State)

2.6 Integrating genomic information into a working breeding program by Nicholas Santantonio (Virginia Tech)

3.1 Integrating environmental information into predictions of GxE from historic wheat yield trials. Hands on: Processing weather data by Noah DeWitt (SunGrains LSU)

3.2 Genomic prediction of superior parental combinations. Hands on: Cross prediction with popvar by Carolina Ballen Taborda (SunGrains/Clemson)

3.3 Optimizing breeding program resource allocation by Jean-Luc Jannink (Cornell/USDA)

3.4 Incorporating HTP and UAV data into predictions of genetic merit: Graduate presentations and discussion. Moderated by Eric Olson (Michigan State University) Speakers: Jordan McBreen (SunGrains/UF), Andrew Herr (Washing State University), Raysa Gevartosky (University of Illinois Urbana-Champaign), Dalton Jones (Utah State)